Abeel online

Abeel, T, Van Parys T, Weiner B, Saeys Y, Galagan J, Van de Peer Y.  2010.  GenomeView: next-generation sequencing visualization. VIB seminar 2010, Blankenberge, Belgium; EMBO Workshop on Visualizing Biological Data 2010, Heidelberg, Germany; 2nd Statseq workshop, Gent, Belgium.

Abeel, T, Saeys Y, Helleputte T, Van de Peer Y, Dupont P.  2010.  Robust biomarker identification for cancer diagnosis with ensemble feature selection methods. Bioinformatics. 26(3):392-398.

McGuire, AM, Weiner B, Riley R, Peterson M, Zucker J, Abeel T, Wapinski I, White J, Koehrsen M, Pearson MD et al..  2009.  Comparative Analysis of Mycobacterium tuberculosis. Broad Retreat.

Weiner, B, Peterson M, McGuire A, Lun D, Zucker J, Abeel T, White J, Sherrid A, Sherman D, Galagan JE.  2009.  Network modeling of Mycobacterium tuberculosis via integration of ChIP-Seq and Transcriptomics. TB sysbio meeting, Seattle.

Gellesch, M, Stolte C, Jen D, Heilman E, Abeel T, Engels R, Borenstein D, Sykes S, Sisk P, Koehrsen M et al..  2009.  Searching and Visualizing Polymorphisms in M. tuberculosis using Next Generation Sequencing. Broad Retreat 2009.

Abeel, T, Van Parys T, Galagan JE.  2009.  Visualization of next-generation sequencing data. . Broad Retreat.

Schutter, KD, Lin Y-C, Tiels P, Hecke AV, Sterck L, Abeel T, Glinka S, Weber-Lehmann J, Rouzé P, Van de Peer Y et al..  2009.  Genome sequence of the recombinant protein production host Pichia pastoris. NGS2009, Barcelona, Spain, BioMagnet 2009, Gent, Belgium.

Abeel, T, Helleputte T, Dupont P, Saeys Y.  2009.  Robust biomarker identification for cancer diagnosis using ensemble feature selection methods. BioMagnet 2009, Gent, Belgium; MLSB 2009, Ljubljana, Slovenia; BBC 2009, Liege, Belgium. Abstract

Abeel, T, Van de Peer Y, Saeys Y.  2009.  Java-ML: a Java Library for Data Mining. MLSB 2009.

Abeel, T, Van de Peer Y, Saeys Y.  2009.  Benchmarking promoter prediction software. ISMB/ECCB 2009 Stockholm, Sweden.

Abeel, T, White JR, Galagan JE.  2009.  Comparative gene-finding in TB genomes. Third Annual New England Tuberculosis Symposium, Boston, United States, 12/06/2009.

Abeel, T, Van de Peer Y, Saeys Y.  2009.  Towards a gold standard for promoter prediction evaluation. Bioinformatics. 25(12):i313-i320.

Abeel, T, Saeys Y, Van de Peer Y.  2009.  Towards a gold standard for promoter prediction evaluation.. ISMB 2009.

Abeel, T, Van de Peer Y, Saeys Y.  2009.  Java-ML: a machine learning library . Journal of Machine Learning Research. 10:931--934.

Saeys, Y, Abeel T, Van de Peer Y.  2009.  Robust biomarker identification using ensemble feature selection techniques. VIB seminar 2009.

Abeel, T, de Ridder J, Peixoto L.  2009.  Highlights from the 5th International Society for Computational Biology Student Council Symposium at the 17th Annual International Conference on Intelligent Systems for Molecular Biology and the 8th European Conference on Computational Biology. BMC Bioinformatics. (10, Suppl 13):I1.

Abeel, T, Van de Peer Y, Saeys Y.  2008.  Towards robust feature selection techniques for high-dimensional datasets in bioinformatics. BBC 2008. :84.

Abeel, T, Van de Peer Y, Saeys Y.  2008.  Towards robust feature selection techniques for high-dimensional datasets in bioinformatics. Proceedings of BBC 2008. :84.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Ensemble feature selection improves selected feature stability. ECML - CIL student poster session.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Improving Promoter Prediction Precision Using Ensemble Methods. MLSB 2008.

Saeys, Y, Abeel T, Van de Peer Y.  2008.  Robust Feature Selection using Ensemble Feature Selection Techniques. Lecture notes in Computer Science. 5212/2008:313-325.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Improving precision of core promoter predictions. 4th ISCB Student Council Symposium.

Abeel, T, Saeys Y, Rouzé P, Van de Peer Y.  2008.  ProSOM: Core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB 2008, Toronto, Canada, 19/7/2008-23/7/2008.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  ProSOM: human core promoter predictions. ISMB 2008.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Core promoter prediction in eukaryote genomes. BioMAGNet-SymBioSys workshop, Leuven, Belgium, 28/05/2008.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Generic core promoter prediction. VIB science club genetics, Leuven, Belgium, 17/04/2008.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  Generic eukaryotic core promoter prediction. VIB seminar 2008, Blankenberge, Belgium, 6/03/2008-7/03/2008.

Abeel, T, Saeys Y, Bonnet E, Rouzé P, Van de Peer Y.  2008.  Generic eukaryotic core promoter prediction using structural features of DNA. Genome Research. 18(2):310-323. Abstract

Abeel, T, Saeys Y, Van de Peer Y.  2008.  ProSOM: Core promoter identification in the human genome. Proceedings of Benelearn 2008. :77-78.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  ProSOM: Core promoter identification in the human genome. Benelearn 2008, Spa, Belgium, 19/05/2008-20/05/2008.

Abeel, T, Saeys Y, Rouzé P, Van de Peer Y.  2008.  ProSOM: Core promoter prediction based on unsupervised clustering of DNA physical profiles. Bioinformatics. 24(13):i24-i31.

Abeel, T, Saeys Y, Van de Peer Y.  2008.  ProSOM: Core promoter prediction based on unsupervised clustering of DNA physical profiles. ISMB 2008, Toronto, Canada, 19/7/2008-23/7/2008.

Saeys, Y, Abeel T, Van de Peer Y.  2008.  Towards robust feature selection techniques. Proceedings of Benelearn 2008. :45-46.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Clustering to improve core promoter prediction. Second contact day of the Computational Intelligence and Learning doctoral school, Leuven, Belgium, 29/08/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Core promoter identification using ensembles of classifiers. Benelearn 2007, Amsterdam, The Netherlands, 15/05/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Core promoter identification using ensembles of classifiers. ISMB/ECCB 2007, Vienna, Austria, 21/07/2007-25/07/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Core promoter prediction for genome annotation. Fourth doctoral symposium of the faculty of Sciences, Ghent, Belgium, 24/04/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Core promoter prediction using ensembles of classifiers. Proceedings of Benelearn 2007. :139-140.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Eukaryotic core promoter prediction using structural features of DNA. Benelux Bioinformatics Conference 2007 (BBC 2007), Leuven, Belgium, 12/11/2007-13/11/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Eukaryotic core promoter prediction using structural features of DNA. Proceedings BBC2007. :29.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  Fast and accurate promoter prediction in human. VIB seminar 2007, Blankenberge, Belgium, 1/3/2007-2/3/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  The Java Machine Learning Library. Proceedings of MLSB 2007. :95.

Abeel, T, Saeys Y, Van de Peer Y.  2007.  The Java Machine Learning Library. Machine Learning in Systems Biology 2007 (MLSB2007), Evry, France, 24/09/2007-25/09/2007.

Saeys, Y, Abeel T, Degroeve S, Van de Peer Y.  2007.  Translation initiation site prediction on a genomic scale: beauty in simplicity. Bioinformatics. 23(13):418-423. Abstract

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Fast and accurate promoter prediction in human. BioMagnet kick-off meeting, Liege, Belgium, 15/2/2007.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Improved core promoter prediction using ensembles of support vector machines. Benelearn 2006, Ghent, Belgium, 11/5/2006-12/5/2006.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Improved core promoter prediction using ensembles of support vector machines. Gent-Lille Workshop on Computational Biology, Lille, France, 20/6/2006.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Improved core promoter prediction using ensembles of support vector machines. Research contact day of the Computational Intelligence and Learning doctoral school, Brussels, Belgium, 25/9/2006.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Improved core promoter prediction using ensembles of support vector machines. International Workshop on Current Challenges in Kernel Methods (CCKM06), Brussels, Belgium, 27/11/2006-28/11/2006.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  Improved core promoter predictions using ensembles of support vector machines. Proceedings of Benelearn 2006. :180-181.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  The structure of the promoter unraveled. Proceedings BBC2006. :31.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  The structure of the promoter unraveled. Young scientists day, Gembloux, Belgium, 18/12/2006.

Abeel, T, Saeys Y, Van de Peer Y.  2006.  The structure of the promoter unravelled. BBC 2006, Wageningen, The Netherlands, 17/10/2006-18/10/2006.